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The work is devoted to the new calibration method for vector geomagnetometer in the visualized coordinate system, which is connected with the body of the instrument. Standard navigation aids allows to transform geomagentic vector in the visualized coordinate system to the global coordinate system. It can be used for linking the received magnetograms to the coordinates on the terrain. The method allows to take into account the non-orthogonality of sensitive axes, difference of sensitivity and offset of magnetic fie...